8IAZ Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8IAZ_001 | 1/E/29:37 | Pseudoknot geometry | geometric HL_6VMY_003 HL_30680.5 | |
| HL_8IAZ_003 | 1/E/132:137 | GNRA | geometric HL_5TBW_036 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8IAZ_002 | No text annotation | ||
| HL_8IAZ_004 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8IAZ_002 | 1/E/55:59, 1/E/110:117 | Kink-turn | geometric IL_5FJ4_002 IL_90775.3 | |
| IL_8IAZ_013 | 1/E/72:84, 1/E/95:105 | No text annotation | ||
| IL_8IAZ_005 | 1/E/74:80, 1/E/98:103 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_7RQB_007 NA | |
| IL_8IAZ_006 | 1/E/81:84, 1/E/95:97 | No text annotation | geometric IL_1L9A_003 NA | |
| IL_8IAZ_007 | 1/E/127:129, 1/E/140:141 | Single stack bend | geometric IL_7RQB_005 NA | |
| IL_8IAZ_008 | 1/E/152:153, 1/E/176:179 | Major groove intercalation | geometric IL_4V9F_067 IL_71421.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8IAZ_009 | No text annotation | ||
| IL_8IAZ_010 | No text annotation | ||
| IL_8IAZ_011 | No text annotation | ||
| IL_8IAZ_012 | No text annotation | ||
| IL_8IAZ_001 | Isolated cWH basepair | ||
| IL_8IAZ_003 | Major groove intercalation | ||
| IL_8IAZ_004 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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